FOR WRITING DNA METHYLATION
Enzyme type: DNA methyltransferases
Example: DNMT3b or DNMT3a
Target: unmethylated cytosines, usually CG
FOR ERASING DNA METHYLATION
Enzyme type: methylcytosine dioxygenase
Example: TET1
Target: methylated cytosines, usually CG
FOR WRITING HISTONE LYSINE ACETYLATION
Enzyme type: Histone Acetyl transferase (HAT)
Example: p300
Target: H3K27
FOR REMOVING HISTONE LYSINE ACETYLATION
Enzyme type: Histone Deacetylase (HDAC)
Example: HDAC3
Target: H3K9
FOR ADDING HISTONE METHYL GROUPS
Enzyme type: Histone Methyltransferase
Example: G9a
Target: H3K9
FOR REMOVING HISTONE METHYL GROUPS
Enzyme type: HISTONE DEMETHYLASE
Example: LSD1
Target: H3K4
There are many, many more. Most eukaryotes have multiple types of EPIGENETIC MODIFYING enzymes and multiple isoforms of each enzyme type, each of which is capable of forming unique complexes with a variety of co-regulators. For example humans have more than a dozen different HDACs. Researchers are currently testing which EPI-ENZYMES are most suitable for custom adaptation to EPIGENETIC EDITING and many "dead" Cas9 fusions have been made. Sometimes it's only a portion of the enzyme like the catalytic domain. This means, EPI-ENGINEERING TOOLS built on HOMING ENYZMES are truly customize-able.